We compute the expectation value of the Wilson line in the AdS$_3$ Chern-Simons gravity theory and also the entanglement entropy in the boundary theory. Because the boundary theory with a quantum correction is not described by CFT, the entanglement entropy is supposed to deviate due to the new quantum correction. By comparing the results on both ends, we show that the Wilson line provides the equivalent description to the boundary entanglement entropy. This comparison leads to a concrete example of the AdS/non-CFT correspondence from the building of ``minimum surface=entanglement entropy''.